A B C D E F G H I J K L M N O P R S T U V W X Y Z

S

sample(double[][], double[], int[], Random) - Static method in class org.knowceans.util.FastMultinomial

Fast sampling from a distribution with weights in factors abc, each element of which is a vector of the size of the sampling space K.

sample0(double[][], Random) - Static method in class org.knowceans.util.FastMultinomial

Standard sampling from a distribution with weights in factors abc, each element of which is a vector of the size of the sampling space K.

sample00(double[][], Random) - Static method in class org.knowceans.util.FastMultinomial

Standard sampling from a distribution with weights in factors abc, each element of which is a vector of the size of the sampling space K.

sample2(double[][], double[], int[], Random) - Static method in class org.knowceans.util.FastMultinomial

sampleIdx() - Method in class org.knowceans.util.FastMultinomial

Fast sampling from a distribution with weights in factors abc, each element of which is a vector of the size of the sampling space K.

sampleIdx(double[][], double[], int[], Random) - Static method in class org.knowceans.util.FastMultinomial

Fast sampling from a distribution with weights in factors abc, each element of which is a vector of the size of the sampling space K.

sampleIdx2(double[][], double[], int[], Random) - Static method in class org.knowceans.util.FastMultinomial

Fast sampling from a distribution with weights in factors abc, each element of which is a vector of the size of the sampling space K.

Samplers - Class in org.knowceans.util

Diverse sampling methods, including beta, gamma, multinomial, and Dirichlet distributions as well as Dirichlet processes, using Sethurahman's stick-breaking construction and Chinese restaurant process.

Samplers() - Constructor for class org.knowceans.util.Samplers

Samplers.CrpData - Class in org.knowceans.util

data structure for a Chinese restaurant process CrpData

Samplers.CrpData(int) - Constructor for class org.knowceans.util.Samplers.CrpData

save() - Method in class org.knowceans.util.ArrayCache

save the complete array to the backend

save(String) - Method in class org.knowceans.util.TableList

Save the table list to a file.

saveAscii(String, double[][]) - Static method in class org.knowceans.util.ArrayIo

saveBinaryIntMatrix(String, int[][]) - Static method in class org.knowceans.util.ArrayIo

Writes integer matrix to binary file.

saveBinaryMatrix(String, double[][]) - Static method in class org.knowceans.util.ArrayIo

Writes matrix to binary file.

saveShades(String, double[][]) - Static method in class org.knowceans.util.ArrayIo

Save a matrix as shaded values using MayaShades.

saveTransposedAscii(String, double[][]) - Static method in class org.knowceans.util.ArrayIo

saveTransposedShades(String, double[][]) - Static method in class org.knowceans.util.ArrayIo

Save a transposed matrix as shaded values using MayaShades.

seed(int) - Static method in class org.knowceans.util.Cokus

Cokus versions/optimizations

set(Collection<E>) - Method in class org.knowceans.sandbox.ListPrinter

resets the printer content, but keeps the configuration.

set(int, TableList.Fields) - Method in class org.knowceans.util.KeyTableList

Set the fields at the index and updates the keys.

set(String, int, Object) - Method in class org.knowceans.util.KeyTableList

Set the field at the index with the value, updating the corresponding key if necessary.

set(int, E) - Method in class org.knowceans.util.SetArrayList

Replaces the element at the specified position in this Vector with the specified element iff the element uniqueness is obeyed by this operation.

set(int, E) - Method in class org.knowceans.util.SetVector

Replaces the element at the specified position in this Vector with the specified element iff the element uniqueness is obeyed by this operation.

set(int, int, Object) - Method in class org.knowceans.util.TableList

Set the field at the index with the value.

set(String, int, Object) - Method in class org.knowceans.util.TableList

Set the field at the index with the value.

SetArrayList<E> - Class in org.knowceans.util

A Collection that implements both the List and the Set interface.

SetArrayList() - Constructor for class org.knowceans.util.SetArrayList

SetArrayList(int) - Constructor for class org.knowceans.util.SetArrayList

SetArrayList(Collection<? extends E>) - Constructor for class org.knowceans.util.SetArrayList

Initialise the SetVector, getting rid of duplicate elements where duplicates

setAsKey(String) - Method in class org.knowceans.util.KeyTableList

Adds an existing field to the table list.

setBasePath(String) - Static method in class org.knowceans.util.Conf

setCount(int, int) - Method in class org.knowceans.corpus.Document

setCounts(int[]) - Method in class org.knowceans.corpus.Document

setData(SetVector<E>) - Method in class org.knowceans.util.ItemList

set the data vector

setDoc(int, Document) - Method in class org.knowceans.corpus.NumCorpus

setDocs(Document[]) - Method in class org.knowceans.corpus.NumCorpus

setElementAt(E, int) - Method in class org.knowceans.util.SetArrayList

Replaces the element at the specified position in this Vector with the specified element iff the element uniqueness is obeyed by this operation.

setElementAt(E, int) - Method in class org.knowceans.util.SetVector

Replaces the element at the specified position in this Vector with the specified element iff the element uniqueness is obeyed by this operation.

setFlags(int) - Method in class org.knowceans.util.PatternString

setFormat(int, int) - Static method in class org.knowceans.util.Vectors

Set the format of the following double print calls to the column width and number of digits.

setKey(K) - Method in class org.knowceans.map.RankingMap.RankEntry

setM(Matcher) - Method in class org.knowceans.util.PatternString

setMain() - Static method in class org.knowceans.util.Which

For multithreaded applications that finish the main thread, call this method in the main() method.

setNumTerms(int) - Method in class org.knowceans.corpus.Document

setNumWords(int) - Method in class org.knowceans.corpus.Document

setOutput(PrintStream) - Static method in class org.knowceans.util.Print

sets the output stream for the printer

setParBounds(int[]) - Method in class org.knowceans.corpus.Document

setPatternCaseInsensitive(boolean) - Method in class org.knowceans.map.HashMultiMap

setPatternCaseInsensitive(boolean) - Method in class org.knowceans.map.PatternTreeMultiMap

setPatternMustMatch(boolean) - Method in class org.knowceans.map.HashMultiMap

setPatternMustMatch(boolean) - Method in class org.knowceans.map.PatternTreeMultiMap

setPropFile(String) - Static method in class org.knowceans.util.Conf

setRand(Random) - Method in class org.knowceans.util.RandomSamplers

setSeed(long) - Method in class org.knowceans.util.CokusRandom

Note: only lower half of seed is used.

setSeed(long) - Method in class org.knowceans.util.CokusSampler

Note: only lower half of seed is used.

setState(int) - Method in class org.knowceans.util.ItemList

sets the state of the list, if the state is larger than the size, it is set to zero

setStateByValue(E) - Method in class org.knowceans.util.ItemList

set the new state of the variable

setString(StringBuilder) - Static method in class org.knowceans.util.Print

reset output to write to a string buffer

setSubVector(int[], int[], int[]) - Static method in class org.knowceans.util.Vectors

set the elements of vec at indices with the respective replacements.

setSubVector(int[], int[], int) - Static method in class org.knowceans.util.Vectors

set the elements of vec at indices with the replacement.

setSubVectorCopy(int[], int[], int[]) - Static method in class org.knowceans.util.Vectors

set the elements of a copy of vec at indices with the respective replacements.

setTerm(int, int) - Method in class org.knowceans.corpus.Document

setText(StringBuffer) - Method in class org.knowceans.util.PatternString

setToStderr() - Static method in class org.knowceans.util.Print

set output to stderr

setToStdout() - Static method in class org.knowceans.util.Print

set output to stdout

setValue(V) - Method in class org.knowceans.map.RankingMap.RankEntry

SetVector<E> - Class in org.knowceans.util

A Collection that implements both the List and the Set interface.

SetVector() - Constructor for class org.knowceans.util.SetVector

SetVector(int) - Constructor for class org.knowceans.util.SetVector

SetVector(int, int) - Constructor for class org.knowceans.util.SetVector

SetVector(Collection<? extends E>) - Constructor for class org.knowceans.util.SetVector

Initialise the SetVector, getting rid of duplicate elements where duplicates

setWords(int[]) - Method in class org.knowceans.corpus.Document

shadeDouble(double[], double) - Static method in class org.knowceans.util.MayaShades

Create a string representation of the vector.

shadeDouble(double, double) - Static method in class org.knowceans.util.MayaShades

create a string representation whose gray value appears as an indicator of magnitude, cf.

showSubObject(String, Object) - Method in class org.knowceans.sandbox.ObjectPrinter

shutdown() - Method in class org.knowceans.util.ParallelFor

shut down the thread pool after final usage

sort(double[], int[]) - Static method in class org.knowceans.util.IndexQuickSort

sort indices

sort(double[]) - Static method in class org.knowceans.util.IndexQuickSort

sort indices

sort(double[], int[], int, int) - Static method in class org.knowceans.util.IndexQuickSort

sort(int[], int[]) - Static method in class org.knowceans.util.IndexQuickSort

sort indices

sort(int[]) - Static method in class org.knowceans.util.IndexQuickSort

sort indices

sort(int[], int[], int, int) - Static method in class org.knowceans.util.IndexQuickSort

sort(T[], Comparator<T>, int[]) - Static method in class org.knowceans.util.IndexQuickSort

sort indices

sort(T[], Comparator<T>) - Static method in class org.knowceans.util.IndexQuickSort

sort indices

sort(T[], Comparator<T>, int[], int, int) - Static method in class org.knowceans.util.IndexQuickSort

sort(String, boolean) - Method in class org.knowceans.util.TableList

Sort the table list by the specified field.

sort(Comparator<TableList.Fields>) - Method in class org.knowceans.util.TableList

Sort the table with the specific comparator given.

sortedKeys(int) - Method in class org.knowceans.map.RankingMap

Get a maximum of count sorted keys.

sortedKeys() - Method in class org.knowceans.map.RankingMap

Get sorted keys.

sortedValues(int) - Method in class org.knowceans.map.RankingMap

Get a maximum of count sorted values.

sortedValues() - Method in class org.knowceans.map.RankingMap

Get sorted values

spacePad(StringBuffer, int) - Method in class org.knowceans.util.Arguments

split(int, int, Random) - Method in interface org.knowceans.corpus.ISplitCorpus

splits two child corpora of size 1/nsplit off the original corpus, which itself is left unchanged (except storing the splits).

split(int, int, Random) - Method in class org.knowceans.corpus.LabelNumCorpus

split(int, int, Random) - Method in class org.knowceans.corpus.NumCorpus

splits two child corpora of size 1/nsplit off the original corpus, which itself is left unchanged (except storing the splits).

split(TableList.Filter) - Method in class org.knowceans.util.TableList

Get two sublists of this list according to the filter criterion.

sqabs(double[]) - Static method in class org.knowceans.util.Vectors

squared absolute value of vector

sqdist(double[], double[]) - Static method in class org.knowceans.util.Vectors

squared euclidean distance between vectors.

stack() - Static method in class org.knowceans.util.Which

returns a stack trace at the current point, without package names and line numbers

start() - Method in class org.knowceans.util.DataThreadPool

start executing the queue

start() - Method in class org.knowceans.util.PatternString

start(int) - Method in class org.knowceans.util.PatternString

start(String) - Static method in class org.knowceans.util.StopWatch

Starts the named watch.

start() - Static method in class org.knowceans.util.StopWatch

Start the default stop watch.

stirling(int) - Method in class org.knowceans.util.CokusDistributionSampler

[ss lmss] = stirling(nn) Gives unsigned Stirling numbers of the first kind s(nn,*) in ss.

stirling(int) - Method in class org.knowceans.util.RandomSamplers

[ss lmss] = stirling(nn) Gives unsigned Stirling numbers of the first kind s(nn,*) in ss.

stirling(int) - Static method in class org.knowceans.util.Samplers

[ss lmss] = stirling(nn) Gives unsigned Stirling numbers of the first kind s(nn,*) in ss.

stop() - Method in class org.knowceans.util.ParallelFor

stop loop execution

stop(String) - Static method in class org.knowceans.util.StopWatch

Get the stopping time of the named watch and reset it.

stop() - Static method in class org.knowceans.util.StopWatch

Get the stopping time of the default watch and reset it.

StopWatch - Class in org.knowceans.util

StopWatch allows to time a java program by simply starting lap-timing, stopping and resetting a stop watch "channel".

string() - Static method in class org.knowceans.util.Print

get the last string that has been written to (if any)

StringOutputStream - Class in org.knowceans.util

stream output into a string builder.

StringOutputStream() - Constructor for class org.knowceans.util.StringOutputStream

init with new string builder

StringOutputStream(StringBuilder) - Constructor for class org.knowceans.util.StringOutputStream

init with provided string builder

strings(Object, Object...) - Static method in class org.knowceans.util.Print

prints all objects via tostring methods

stringSep(String, Object...) - Static method in class org.knowceans.util.Print

prints all objects via tostring methods, separated by sep

sub(double[], int, int) - Static method in class org.knowceans.util.Vectors

sub(int[], int, int) - Static method in class org.knowceans.util.Vectors

subSequence(int, int) - Method in class org.knowceans.util.PatternString

substitute(String, String, String) - Method in class org.knowceans.util.PatternString

emulates a perl substitution expression like: this =~ s/expression/replacement/perlFlags

substitute(String, String, int, boolean) - Method in class org.knowceans.util.PatternString

emulates a perl substitution expression like: this =~ s/expression/replacement/perlFlags

substitute(String, String) - Method in class org.knowceans.util.PatternString

emulates a perl substitution expression like: this =~ s/expression/replacement/

substituteAll(String, String) - Method in class org.knowceans.util.PatternString

performs global replace of the string expression with the replacement.

subtract(T) - Method in class org.knowceans.map.CategoryMap

subtract one point to the element.

subtract(int[], int[]) - Static method in class org.knowceans.util.Vectors

a-=b

subtract(double[], int[]) - Static method in class org.knowceans.util.Vectors

a-=b

subtract(int[], double[]) - Static method in class org.knowceans.util.Vectors

a-=b

subtract(double[], double[]) - Static method in class org.knowceans.util.Vectors

a-=b

subVector(double[], int[]) - Static method in class org.knowceans.util.Vectors

returns a copy of the vector elements with the given indices in the original vector.

subVector(int[], int[]) - Static method in class org.knowceans.util.Vectors

returns a copy of the vector elements with the given indices in the original vector.

subVector(double[], int, int) - Static method in class org.knowceans.util.Vectors

sum(double[]) - Static method in class org.knowceans.util.Vectors

sum the elements of vec

sum(float[]) - Static method in class org.knowceans.util.Vectors

sum the elements of vec

sum(int[]) - Static method in class org.knowceans.util.Vectors

sum the elements of vec

sumcube(double[]) - Static method in class org.knowceans.util.FastMultinomial

calculate sum of cubes of argument

swap(int[], int, int) - Static method in class org.knowceans.util.IndexQuickSort