A B C D E F G H I J K L M N O P R S T U V W X Y Z

P

padSpace(String, int) - Static method in class org.knowceans.util.ArrayIo

ParallelFor - Class in org.knowceans.util

ParallelFor implements what in OpenMP is called a parallel for loop, i.e., a loop that executes in parallel on several threads with a barrier (join) at the end.

ParallelFor() - Constructor for class org.knowceans.util.ParallelFor

instantiate with as many threads as there are processors

ParallelFor(int) - Constructor for class org.knowceans.util.ParallelFor

instantiate a parallel for implementation

parse(String[]) - Method in class org.knowceans.util.Arguments

Parses the command line arguments string whose values can be found with the getOption and getArgument methods afterwards.

PatternString - Class in org.knowceans.util

PatternString is a wrapper around pattern matching and substitution functionality inspired by the Perl a =~ exp functions.

PatternString(String) - Constructor for class org.knowceans.util.PatternString

Create a PatternString from the input, with an empty matcher.

PatternString(StringBuffer) - Constructor for class org.knowceans.util.PatternString

Create a PatternString from the input, with an empty matcher.

PatternString() - Constructor for class org.knowceans.util.PatternString

Create a empty PatternString.

PatternTreeMultiMap<X,Y> - Class in org.knowceans.map

Implementation of the IMultiMap interface backed by a TreeMap.

PatternTreeMultiMap() - Constructor for class org.knowceans.map.PatternTreeMultiMap

PatternTreeMultiMap(Comparator<? super X>) - Constructor for class org.knowceans.map.PatternTreeMultiMap

PatternTreeMultiMap(Map) - Constructor for class org.knowceans.map.PatternTreeMultiMap

pdfBeta(double, double, double) - Static method in class org.knowceans.util.Densities

beta likelihood

pdfBinomial(int, int, double) - Static method in class org.knowceans.util.Densities

Binom(n | N, p) using linear binomial coefficient

pdfDirichlet(double[], double[]) - Static method in class org.knowceans.util.Densities

Dirichlet likelihood using logarithmic calculation

pdfDirichlet(double[], double[], double) - Static method in class org.knowceans.util.Densities

Dirichlet likelihood using logarithmic calculation

pdfDirichlet(double[], double) - Static method in class org.knowceans.util.Densities

Symmetric Dirichlet likelihood:

pdfDmm(double[], double[], double[][], double[]) - Static method in class org.knowceans.util.Densities

Dirichlet mixture likelihood using mean and precision

pdfDmm(double[], double[], double[][]) - Static method in class org.knowceans.util.Densities

Dirichlet mixture likelihood using Dirichlet parameters and assuming independence between components.

pdfGamma(double, double, double) - Static method in class org.knowceans.util.Densities

gamma likelihood p(x|a,b) = x^(a-1) * e^(-x/b) / (b^a * Gamma(a))

pdfGmm(double, double[], double[], double[]) - Static method in class org.knowceans.util.Densities

GMM likelihood

pdfMultinomial(int[], double[]) - Static method in class org.knowceans.util.Densities

Mult(nn|pp) using logarithmic multinomial coefficient

pdfNorm(double, double, double) - Static method in class org.knowceans.util.Densities

Normal likelihood

perl(String) - Method in class org.knowceans.util.PatternString

Perform the command in a perl specification on this and return this, e.g., this =~ s/exp/subs/flags will call substitute(exp, subs, flags).

Print - Class in org.knowceans.util

convenience class to print information.

Print() - Constructor for class org.knowceans.util.Print

print(String) - Static method in class org.knowceans.util.StopWatch

Print toString() to stdout.

print() - Static method in class org.knowceans.util.StopWatch

Print toString() of the default watch to stdout.

print(double[]) - Static method in class org.knowceans.util.Vectors

prints a double representation of the vector.

print(float[]) - Static method in class org.knowceans.util.Vectors

print(Object) - Static method in class org.knowceans.util.Vectors

print(Object[]) - Static method in class org.knowceans.util.Vectors

Print the array of objects via their toString() methods.

print(Object[], String) - Static method in class org.knowceans.util.Vectors

Print the array of objects via their toString() methods, using the delimiter.

print(double[][]) - Static method in class org.knowceans.util.Vectors

prints a double representation of an array.

print(float[][]) - Static method in class org.knowceans.util.Vectors

print(int[]) - Static method in class org.knowceans.util.Vectors

prints a double representation of the vector.

print(int[][]) - Static method in class org.knowceans.util.Vectors

prints a double representation of an array.

print(int[][], String) - Static method in class org.knowceans.util.Vectors

prints a double representation of an array.

printf(T, String, String) - Static method in class org.knowceans.util.Vectors

Print the double array of objects via their toString() methods, using the delimiter.

process(int, int) - Method in class org.knowceans.util.ParallelFor

payload for the for loop

product(double[]) - Static method in class org.knowceans.util.Vectors

product of the values in vec

put(X, Y) - Method in class org.knowceans.map.BijectiveHashMap

put key-value pair into the map.

put(X, Y) - Method in class org.knowceans.map.BijectiveTreeMap

put key-value pair into the map.

put(T, Integer) - Method in class org.knowceans.map.CategoryMap

put(X, Set<Y>) - Method in class org.knowceans.map.HashMultiMap

put a complete Set of values to a key.

put(X, Y) - Method in class org.knowceans.map.InvertibleHashMap

put a new key-value pair.

put(X, Set<Y>) - Method in class org.knowceans.map.InvertibleHashMultiMap

put a new key-valueSet pair.

put(X, Y) - Method in class org.knowceans.map.InvertibleTreeMap

put a new key-value pair.

put(X, Set<Y>) - Method in class org.knowceans.map.InvertibleTreeMultiMap

put a new key-valueSet pair.

put(K[], V[]) - Method in class org.knowceans.map.RankingMap

Put the two arrays (of equal size) into the map

put(List<K>, List<V>) - Method in class org.knowceans.map.RankingMap

put keys and values

put(X, Set<Y>) - Method in class org.knowceans.map.TreeMultiMap

put a complete Set of values to a key.

putAll(Map<? extends T, ? extends Integer>) - Method in class org.knowceans.map.CategoryMap